API

• Arbitrary shape
  • checkerboard_mask()
  • generate_ellipse()
  • add_sphere_nuclei()
  • remove_nuclei()
  • elbow_grid_cube()
• Expression patterns
  • create_fix_profile()
  • simulate_arbritrary_expression()
  • filter_simulation()
  • sim_spots_from_ref_anndata()
• Tissue simulation
  • simulate_single_cell_mask()